TRANSFAC provides data on eukaryotic transcription factors, their experimentally-proven binding sites, consensus binding sequences (positional weight matrices) and regulated genes. TRANSCompel contains data on eukaryotic transcription factors experimentally proven to act together in a synergistic or antagonistic manner.

Schrodinger Suite

RStudio is an integrated development environment (IDE) for R. It includes a console, syntax-highlighting editor that supports direct code execution, as well as tools for plotting, history, debugging and workspace management.

R is a free software environment for statistical computing and graphics. It compiles and runs on a wide variety of UNIX platforms, Windows and MacOS.

 PyMol

MacVector provides numerous functions for DNA and protein analysis, including sequence editing, primer design, internet database searching, protein analysis, multiple sequence alignment, phylogenetic reconstruction, coding region analysis, and agarose gel simulation.

DNASTAR's Lasergene Molecular Biology Suite is our comprehensive package of molecular biology software, meeting all of your sequence analysis needs. Supported workflows include performing multiple and pairwise sequence alignments, identifying genes, assembling contigs of Sanger sequences, creating virtual clones, designing primers, and more.

LabArchives is a secure, cloud-based electronic lab notebook (ELN) designed for research. This ELN system enables researchers to capture, manage, store, and share information and data. LabArchives facilitates collaboration amongst researchers within a loab, institution, and with external stakeholders.

Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution. Available through the bioconductor package in R

Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data.