List of resources that are NOT open-source:

i2b2

i2b2 enables researchers to discover cohorts of patients using data from EHR systems.  Through a point-and-click interface, researchers can build queries drawing from demographics, diagnoses, procedures, medications, and results recorded in Epic, the EHR system of Weill Cornell Physician Organization outpatient clinics (access to data from Eclipsys/Allscripts Sunrise Clinical Manager, the EHR system of NewYork-Presbyterian inpatient units, is planned).  i2b2 supports different types of queries of clinical data, including whether clinical concepts occurred at any point in a patient’s medical

FlowJo

The FlowJo workspace is a powerful statistical environment that is used for immunophenotyping, cell cycle, proliferation, kinetics studies, quantitative population comparison, or plate screening assays.

Annual license cost is determined by the number of active users each quarter. Thus we can only provide an estimate of the cost based on current usage.

Endnote

Endnote is a bibliographic management tool for storing and accessing shared references, documents and files. Endnote allows the autmated insertion of citations in MS Word in over 6000 styles. Endnote can retrieve the full text of all articles in your library from freely available sources and the Samuel J. Wood library's subscriptions.

Biorender

Biorender is an online graphics tool for building high quality figures for the life sciences. Our institutional account will allow discounted access to all faculty, staff and students. All licenses expire on May 30th of each year regardless of when the license is purchased.

BioCyc

"BioCyc.org is a microbial genome Web portal that combines thousands of genomes with additional information inferred by computer programs, imported from other databases and curated from the biomedical literature by biologist curators. BioCyc also provides an extensive range of query tools, visualization services and analysis software." (Karp et al., 2019)

ArcGIS

ArcGIS is a geographic information system (GIS) for working with maps and geographic information. The license is valid until September 1st each year. 

SAS

SAS (Statistical Analysis System) is a software suite developed by SAS Institute for advanced analytics, multivariate analyses, business intelligence, data management, and predictive analytics. The suite purchased through WCM includes

  • SAS InterNet Connector
  • SAS Genetics Module
  • SAS Genetics Server Connector
  • SAS AppDev Studio Module
  • SAS Text Miner Module

The SAS license is valid from May 15 of each to May 14 of the following year.

Ingenuity Pathway Analysis

IPA is a web-based software application for the analysis, integration, and interpretation of data derived from 'omics experiments, such as RNAseq, small RNAseq, microarrays including miRNA and SNP, metabolomics, proteomics, and small scale experiments that generate gene and chemi- cal lists. Powerful analysis and search tools uncover the significance of data and identify new targets or candidate biomarkers within the context of biological systems.